Janelia Farm FlyEM Project

FlyEM Software Dependencies

There are a number of applications used within Janelia Farm’s FlyEM project. Below is a table showing possible software dependencies and the open source license they use. When a license has different wording than one of the popular licenses, we note similar licenses in the Notes area and usually provide a link to a web page that describes the license in more detail. A simple explanation of the compatibility of open source licenses can be found here.

Software License Notes
atlas 3.10.0 BSD  
blist 1.3.4 BSD Link
boost 1.51.0 Boost Software License Very similar to BSD and MIT
cppunit 1.12.1 LGPLv2.1  
fftw 3.3.2 GPLv2+ Option to purchase non-free version from MIT
freetype 2.4.10 FreeType License or GPLv2 Similar to BSD
doxygen 1.8.2 GPL link
glfw 2.7.7 zlib/libpng license Very similar to BSD
greenlet 0.4.0 MIT Link
gtest 1.6.0 BSD Link
h5py 2.1.0 BSD  
hdf5 1.8.9 HDF License Almost identical to BSD
ilastik 0.6.0 BSD  
ilmbase 1.0.2 BSD  
libjpeg v8d Libjpeg License Similar to BSD
jsoncpp 0.5.0 MIT or public domain Link
lapack 3.4.2 Modified BSD  
leveldb 1.6.0 BSD Link
libpng 1.5.13 Libpng License Similar to BSD
matplotlib 1.1.1 Matplotlib License Based on PSF license
networkx 1.7 BSD Link
nose 1.2.1 LGPLv2.1  
numpy 1.6.2 BSD Link
openexr 1.6.1 BSD Link
openvdb 0.97 Mozilla Public License 2.0 link
progressbar 2.3 BSD or LGPL Link
pyqt 4.9.5 GPLv2 or GPLv3 Commercial available
python 2.7.3 Python Software Foundation (PSF) License Link
qimage2ndarray 1.0 BSD  
qt 4.8.3 LGPLv2.1 GPLv3 and commercial available
scikit-image 0.7.2 BSD Link
scikit-learn 0.12.1 BSD  
scipy 0.11.0 BSD Link
scons 1.2.0 MIT Link
setuptools 0.6c11 PSF or ZPL  
sip 4.14.1 SIP License Similar to PSF with optional GPLv2, GPLv3
tbb 4.1 GPLv2 with runtime exception See license on right
thrift 0.8.0 Apache 2.0  
libtiff 4.0.3 Libtiff License Similar to BSD
vigra 1.8.0 MIT Link
zlib 1.2.7 zlib License Similar to BSD