There are a number of applications used within Janelia Farm’s FlyEM project. Below is a table showing possible software dependencies and the open source license they use. When a license has different wording than one of the popular licenses, we note similar licenses in the Notes area and usually provide a link to a web page that describes the license in more detail. A simple explanation of the compatibility of open source licenses can be found here.
| Software | License | Notes |
|---|---|---|
| atlas 3.10.0 | BSD | |
| blist 1.3.4 | BSD | Link |
| boost 1.51.0 | Boost Software License | Very similar to BSD and MIT |
| cppunit 1.12.1 | LGPLv2.1 | |
| fftw 3.3.2 | GPLv2+ | Option to purchase non-free version from MIT |
| freetype 2.4.10 | FreeType License or GPLv2 | Similar to BSD |
| doxygen 1.8.2 | GPL | link |
| glfw 2.7.7 | zlib/libpng license | Very similar to BSD |
| greenlet 0.4.0 | MIT | Link |
| gtest 1.6.0 | BSD | Link |
| h5py 2.1.0 | BSD | |
| hdf5 1.8.9 | HDF License | Almost identical to BSD |
| ilastik 0.6.0 | BSD | |
| ilmbase 1.0.2 | BSD | |
| libjpeg v8d | Libjpeg License | Similar to BSD |
| jsoncpp 0.5.0 | MIT or public domain | Link |
| lapack 3.4.2 | Modified BSD | |
| leveldb 1.6.0 | BSD | Link |
| libpng 1.5.13 | Libpng License | Similar to BSD |
| matplotlib 1.1.1 | Matplotlib License | Based on PSF license |
| networkx 1.7 | BSD | Link |
| nose 1.2.1 | LGPLv2.1 | |
| numpy 1.6.2 | BSD | Link |
| openexr 1.6.1 | BSD | Link |
| openvdb 0.97 | Mozilla Public License 2.0 | link |
| progressbar 2.3 | BSD or LGPL | Link |
| pyqt 4.9.5 | GPLv2 or GPLv3 | Commercial available |
| python 2.7.3 | Python Software Foundation (PSF) License | Link |
| qimage2ndarray 1.0 | BSD | |
| qt 4.8.3 | LGPLv2.1 | GPLv3 and commercial available |
| scikit-image 0.7.2 | BSD | Link |
| scikit-learn 0.12.1 | BSD | |
| scipy 0.11.0 | BSD | Link |
| scons 1.2.0 | MIT | Link |
| setuptools 0.6c11 | PSF or ZPL | |
| sip 4.14.1 | SIP License | Similar to PSF with optional GPLv2, GPLv3 |
| tbb 4.1 | GPLv2 with runtime exception | See license on right |
| thrift 0.8.0 | Apache 2.0 | |
| libtiff 4.0.3 | Libtiff License | Similar to BSD |
| vigra 1.8.0 | MIT | Link |
| zlib 1.2.7 | zlib License | Similar to BSD |